Scaffold Ga0133913

Basic Information
Taxon OID	3300010885 Open in IMG/M
Scaffold ID	Ga0133913_10085183 Open in IMG/M
Source Dataset Name	northern Canada Lakes Co-assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010885 Open in IMG/M

Scaffold ID

Ga0133913_10085183 Open in IMG/M

Source Dataset Name

northern Canada Lakes Co-assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8476
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (50.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

8476

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (50.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F004256	Metagenome	446	Y
F024484	Metagenome / Metatranscriptome	205	Y
F029568	Metagenome / Metatranscriptome	188	Y
F043882	Metagenome	155	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0133913_1008518312	F024484	N/A	MVYRVNISMLSKTSYTVDTSLFREACLQLPNEGMKTTINQPTGNFFYDPWILKDEYKGTVWETLYNSLPVAKGEARIIILDPARCYQTHADIDDRYHLNILGEACYLIDLVKEQMYRLEQDGVWYDMNAGLLHTATNFGRRARVQLVVRHLLKKNELLDPVEIVLSSTVSNTDDTRFIFDNTLSLWLNQANKLGYINNFSYSPITVKFNIEKNKLDLFKSILPAEFSLI*
Ga0133913_100851833	F043882	AGAAG	MGSNGKINTVNKNKIMGTFYISRPSLAYVHVPRTGMAMKKIISDWLKPNFDVSDTDPWMIDHPHLGMVKEYYPYAKTMSVVRNPWQRVYSLYRKVSTEGYWLDWNNQTVLDLKPINEWVADYCNPEIEFNFPRWFTRFTNQVDFIHVNDENVDFVCKAENLVEDFVIVKEYLSCDIPLPDISGYDHWEFLNYFNNESIQLISKMHERDIDTFKYSLRVST*
Ga0133913_100851835	F029568	N/A	MYSRYDLKDTHIVVYYQSNNEFEQVRKQCLEENNWLRHNYTEDNLRIEDHHGYGVVYQVSTGKPMVMGGVFNDGRYPSTVAKMINRLYTFPEFRMTHTDMTDGFRVTCSLIDRLIADNSFECYLITMQNRPRGGKRWWDIWKQHMDTASDNQWQHGLGYIQTCPWPVQKCWQNFVYRNISERAFENWNPTVINDQEWNMLPEGK*
Ga0133913_100851839	F004256	N/A	MELNYYWNNVPGIGLCRNNLIYTSLMSNDNKTFVQWYYNDPEYHKGQNEVIDPSKMEEKWLREVNYLTQMRNRYPELIPKIILIELDAKKLYLEVDGVDFWNRAGCSIDNYDKVLPDWQDQMLNIIQAHKSLGLYKFSMHPSSYFIVDGKLKSINYFFTYAAHEGPISIADHASHIYSARQDIMRKQIEQMGLSWDKPESLKTLQMLCFESFRTNYPADFIEKAKAIYD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0133913_10085183

Overview

Ecosystem & Geography

Associated Families

Sequences