Scaffold Ga0133913_10083961

Overview

Basic Information

• Taxon OID: 3300010885
• Scaffold ID: Ga0133913_10083961
• Source Dataset Name: northern Canada Lakes Co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8541
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009669	Metagenome / Metatranscriptome	314	Y
F010817	Metagenome / Metatranscriptome	298	Y
F014229	Metagenome / Metatranscriptome	264	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133913_100839612	F009669	N/A	MKTMLSKIFGPNWRSSSSGIATVVAVTTAIAIHSDPSLVAFLPDKAEVYILGIAKLIAVVSGIVFALTVKDAAVTGGTVAQTSEAKDRTNGENI*
Ga0133913_100839613	F014229	GGAG	MNKLQLAAVALLSVFLGACATTPTGQVDPATSVSNALPYVKPAVVLACTVVLDQAVSGNDRIEKAKMINHAASIVEGLTVGTAPTPEQLQKALNDYLPSEKTHWVNYVSVIKDIYAQQFARLDGNTALAIKVLNAIASGCKDATASYVE*
Ga0133913_100839615	F010817	N/A	LKKFVSALVLNLFLIGCATITPNKIEDDKSSYDATTPKQYQKDNGGLISFVGDDALITSQARERYNNLIGMYKIKFKKEKAIELKIDSGVKPYKDAYNNDLYLIDSEHLVYFGVLNSWLKEKVPQDNILDKTIDKINN*