Scaffold Ga0133913_10080973

Overview

Basic Information

• Taxon OID: 3300010885
• Scaffold ID: Ga0133913_10080973
• Source Dataset Name: northern Canada Lakes Co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8708
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020863	Metagenome	221	Y
F055450	Metagenome / Metatranscriptome	138	Y
F068601	Metagenome	124	Y
F068766	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0133913_1008097310	F068766	AGGAGG	MSDDVVVAFHPKNKLVNFYEIATEEGNAVWGGEDPHSAVEWLRRSPLNSRLLVSCWEAGEEDARLMIEPIDITKVVFAVMAGTQ*
Ga0133913_1008097317	F020863	N/A	MEEIRNLVIALEKLIQPLFEGDVVEDAPYESMKRPHLVLQEGSKTYGRAYRIHFTGGSKYGSGHWEPRGFSDYLGMTKAEAEQSLRKLIAGIHTGLMIAEKKEETA*
Ga0133913_100809737	F068601	GGAGG	VRTNESQGNIVALSDIREEKLRALSPYGPVKAGLTTLPRTSEEVRLTELLNSLENVVDSLNFKSFTVYDTLNTAIEGVRVALSHITTDEAGTDTL*
Ga0133913_100809738	F055450	GGAGG	MEDNKRLRGAANQAVRQRNYRRARDRALVRLAHLYPDTYKQLLEMEKKTDDQEGKTWLDLDGNTIPVVGIRIRTSDGRGEPSLKDHIHKGTDEGNNGGEA*