Scaffold Ga0133913

Basic Information
Taxon OID	3300010885 Open in IMG/M
Scaffold ID	Ga0133913_10062334 Open in IMG/M
Source Dataset Name	northern Canada Lakes Co-assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010885 Open in IMG/M

Scaffold ID

Ga0133913_10062334 Open in IMG/M

Source Dataset Name

northern Canada Lakes Co-assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9999
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (20.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

9999

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (20.00%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F048735	Metagenome	147	N
F055388	Metagenome / Metatranscriptome	138	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0133913_100623344	F055388	GAG	MVARSLTNQNRVLEGATFSWHIILKNKQTNYMAQNGVTFSSCQDVDSLFREARTYYNPFFIKKMAINSIYYGRLETETWPLNTLPTMKAFRFGRGWYNPDQPWQEVQSGRCIQNADEVQFEKIAHPGTESYSFSLFTKAMRTDWYQLTDFMYRLFPQEEMDHIMGTNVNITKNVHEEFARSNWIGGSGHKWIPISNGQSLVSCATPDDQMFIVQPFEGTNEGFFNMGYVYVKLPVSQLNNIGLLSLDTLDDLLVNLQREDDAYRLDVSEAAGRPLLEIIVPDARVLRQLWQYAKQSGGYWESVSDFDDKQLQYSLGIDRVIGNYAFCNDINGVRLNVDWVYNASLPTFNANDPTTWPRLVRVLPYIPVSTELGCKYIQNQAFQYADFGITNPWVNKAMIKWISPSQSGIGEAQGMTQNYAGDWEWKNPDWECNIKRDQGFFWNQFRMGMQFQDPTLMHSILHRLNNVQLVIPAACNLVPNYTPQYTPDCFVCSSVVTEPI*
Ga0133913_100623349	F048735	N/A	MEYNGFNLRPPEDTTYGLSFLETSPQFMRELIAYRLTRGEFGRRERIKMGIKLENTTLKNPAQHMINCFQLIFEDDVLLHSQGIVNNYAVDIVDLFCNENDWGIAGCASSGKTFSVAACIVIDWLCAPNCTSTYVASTSLDASEDRLWGKVCTLYRVAMRNLQSKYGKDSSIGNLVEYRRMIVFESIDTKDSERDYTNAIKALAFPRGGEGKRSVENTRGRKNARMRLFLDELAEMDLYALDTRVNLGANPDFIFGGMANPSNTANNPHTELCQPDDPMEWDAVTRYTHKWTTRTGVALHLSGEDSPNFKVPDAIIPPFDRFLTIEGEAATLKRCYGNKNALEYWRNVYGWWPDSSVELTIFSKQFIQACDIAWEPTWSDRTRVVCGFDPAFTAGGDRCAATFCRYGPNDTGRRVGFYLGTKEYSSSVGDVFEESIAMQLVKDCLEYGVQPRDFGLDISGDGGKMLRAIIIEWGKFHPEAMFIHPISSMGMPTDRKISSLDKRTAKEAYDRRVTESWFQVHTAMSTKSLVGIDVEKHSSIVNELCSRLYFHKGRKVAVEKKLDMKKRIKKSPDLADSLTYAVEMLSKAGLEFTFEDDAKESLDILEIRDWEDRLIHSKNNSQEEVDNDDWGYGSSSVDPDGF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0133913_10062334

Overview

Ecosystem & Geography

Associated Families

Sequences