Basic Information | |
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Taxon OID | 3300010885 Open in IMG/M |
Scaffold ID | Ga0133913_10010393 Open in IMG/M |
Source Dataset Name | northern Canada Lakes Co-assembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 24440 |
Total Scaffold Genes | 35 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F036062 | Metagenome | 170 | Y |
F041555 | Metagenome | 159 | N |
F079523 | Metagenome | 115 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0133913_1001039319 | F079523 | AGCAGG | MVSELWDTKTVTEYLQINLNNLRQLQYRKTIKWVEKKGKSVFYLADEVRAYKDLRESRKTVN* |
Ga0133913_1001039325 | F041555 | AGG | MTSGVHQIDGRIASKAAVKIRAALKQSIDARQVITDYAMTHPTVSEFISQDRARARAWAMHNVTLDHEALEAALKRHYATMYVVGVASTYDDFGRILRAKKAEKKPPHNWDAMGWAKDVLTHSIDWQTWEPGNKVGEALLRQPGGLEKLLNGIKIKSAEMKGTSYDLLGSKLADGLAIGASPTRLSEMIQDSIANPERSLMIALTEGSRAANFAAKDSFESLGVEKIQWSSADPDDEECDIDGEVTEIDGVFSNGLGIDDMPVHPNCRCLITTPPDLPEGFVPFADDEEIE* |
Ga0133913_1001039326 | F036062 | GAGG | MALIHTNVTVGTTATPLVTLPNGVGYVAVSIQNRDTVAIAVGDANITMASGANGGHTIAATTGTYQVWMHGNETIYGISAAGTSTGAVSIIYPA* |
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