Scaffold Ga0133913_10010393

Overview

Basic Information

• Taxon OID: 3300010885
• Scaffold ID: Ga0133913_10010393
• Source Dataset Name: northern Canada Lakes Co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24440
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036062	Metagenome	170	Y
F041555	Metagenome	159	N
F079523	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133913_1001039319	F079523	AGCAGG	MVSELWDTKTVTEYLQINLNNLRQLQYRKTIKWVEKKGKSVFYLADEVRAYKDLRESRKTVN*
Ga0133913_1001039325	F041555	AGG	MTSGVHQIDGRIASKAAVKIRAALKQSIDARQVITDYAMTHPTVSEFISQDRARARAWAMHNVTLDHEALEAALKRHYATMYVVGVASTYDDFGRILRAKKAEKKPPHNWDAMGWAKDVLTHSIDWQTWEPGNKVGEALLRQPGGLEKLLNGIKIKSAEMKGTSYDLLGSKLADGLAIGASPTRLSEMIQDSIANPERSLMIALTEGSRAANFAAKDSFESLGVEKIQWSSADPDDEECDIDGEVTEIDGVFSNGLGIDDMPVHPNCRCLITTPPDLPEGFVPFADDEEIE*
Ga0133913_1001039326	F036062	GAGG	MALIHTNVTVGTTATPLVTLPNGVGYVAVSIQNRDTVAIAVGDANITMASGANGGHTIAATTGTYQVWMHGNETIYGISAAGTSTGAVSIIYPA*