Scaffold Ga0133913_10003922

Overview

Basic Information

• Taxon OID: 3300010885
• Scaffold ID: Ga0133913_10003922
• Source Dataset Name: northern Canada Lakes Co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37622
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (31.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030429	Metagenome	185	Y
F048777	Metagenome	147	Y
F073550	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133913_1000392223	F030429	GGA	MGIVWRCQDYKISRHAVHKRLERIANERGLPLTITRKQWHLDSRVSDEQAQSEELRKDGLPYETSLLHNAFSVARMSLQDRHYIRSIVESLGENSHVLNGDRILVLYEADLLSTESVLLIQRLLEMRSESENISVWMTVRETVPHKLYDWFLDIPVPLSAPLYHPWSVVVWDWIQTTRSLKEHDIQHIESIRNTIYTLLQRNIRWFDIHQIILELVLENYRELGPTLTNKILETLANSPNTAPGHTLTSYRIPISWENFFVCLYDILVNTK*
Ga0133913_100039223	F048777	N/A	MKFPSWFNEKLISILGLCVIVYIIYVNFTGNKSQGFQVTNNTVLDTSTKTMFPYTTEPINSLDQYELEAVFTNEGDRELKKQQINQMTRRYPLDWTNYPPNSSKFQSEQAKYIEGFSSDSSAQNLNEPYKEIGDGNLTPPDTIAIEKEEREILQTYEPRKSGSVTAYDVNDAQKLLENIYKPKGLKPTVVRKEGNVFEVLSTRSLKDKIEYEDDLPDASISSGSGLGAGEAVIEVPPVATEMAAGRDPFYEPTTSTRSSRTDYMRWTPGLERMFAPTNPTSDWIGQPK*
Ga0133913_100039227	F073550	N/A	MSGVPQLPASTLFDVRLKKDQARQRAYNQILEQALQKVAHCVTAPNQPTFVYYNVPPFVLGLPSLDLKDCIVYIVYQLRFQGYEVRYTFPNLLWISWAHHERQYLMEKNPIVQSMIPPKMAGPEKRKGASAVSLQQAATSTPNAGPILRAADYTPPAGFVETMERPSPYAKLKQSVRFSDTTDPLGNVLDDLWKI*