Scaffold Ga0133913_10003175

Overview

Basic Information

• Taxon OID: 3300010885
• Scaffold ID: Ga0133913_10003175
• Source Dataset Name: northern Canada Lakes Co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40771
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (88.68%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011388	Metagenome	291	Y
F036683	Metagenome	169	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0133913_1000317551	F036683	GGA	MAGETLSALRTSVRSDLRDPNGATWSDTEVNDLINSGIDWVNGFYPKEAIQSVAYTQPVSGAVNSVALSTVSWPFRVDVYDSSGQYRESLHPSSGDGPDSGWEVHSGIIFFPPHYTLPSPGTLKIFGYSGFVQLSSSTATTDMDVSAIASVRVWAQAEAFNRLLSDRVAFQQWQVQSGNSDVSALSMNQIALSNQARVRREEARLRRIRRLG*
Ga0133913_100031756	F011388	AGGA	MAVVCLHHALYKLGIKNPIAGDQSSYQQWLDAPYEWYHVGIQQETAELVFREIETILGSAHPAQRGRGCAISKELGKVIETSKKYRGEYPWIKFHPIIGGASIHFRTTQDRAKALLGKDMNGISFDEAAFEPHLVMIYQEVLNLRRLSTGGPLHFIGTPSEGINDYSELWEKGNPENPVRDDKFISFRLSTRDNIGYGLTQDNFDDVIRQQAAYLIPQNIDGYFIEARDAFFWSQSILAAYKTAEDESSPIRAHRYVQGVDPGISHDATWAITLDTTQRGKLKGVRIRKRGGKQSISSVVNMVREGHLLYSQDGAFCTTIVDSTGLGGRLFQQEFSIIRPLRGFDFGGTKAKKVELLNDLKAVIDKGQIEFPIGGAWDELKRQLLIYRLEDKKLEQDAVMALAIAVRHALRNPEKGLENPAFTYYGASD*