Scaffold Ga0133547_11868635

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0133547_11868635

Scaffold Ga0133547_11868635

Overview

Basic Information
Taxon OID	3300010883 Open in IMG/M
Scaffold ID	Ga0133547_11868635 Open in IMG/M
Source Dataset Name	western Arctic Ocean co-assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1107
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	79.2466	Long. (^o)	-150.0613	Alt. (m)		Depth (m)	190
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013135	Metagenome	274	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133547_118686352	F013135	AGAAGG	MADVQLSEEAIEFEKQFEESTKKVTPVNSGLITNPDEEDFNFWNKAGSLTLSAGQGVVNAVEEQGDFLDENIVSLGGLEFGDEDGKFTFKDLIPKYVSPKKWKEGGYSQKRNLPVFHKPEGIGENLTEGAARFVTGFIGPSKILKGVGLGGNIIKTGLRGMTAGAVADLTVFDP

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