Scaffold Ga0133547_11587641

Overview

Basic Information

• Taxon OID: 3300010883
• Scaffold ID: Ga0133547_11587641
• Source Dataset Name: western Arctic Ocean co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1223
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 190

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004163	Metagenome	450	Y
F012625	Metagenome	279	Y
F022314	Metagenome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133547_115876412	F012625	GAG	MDPLHNKTISVGDLVREHTKHSKGRVGLVHEIISNYYLVVKWLDGSVDKRHRNKYEVTKIVDGETYPNYLQDYIQGKRW*
Ga0133547_115876414	F022314	AGGA	LGGIDILKLGDMVRLVRHEPPEDPFHTFSTEQIDRMGVGLVVSMEELNSYIDTPEKKWVEYTILWSGRKTQLKHLGFDLIKITGE*
Ga0133547_115876415	F004163	AGGAG	MKQTIEQVKRIVLELKHYFEKSLPLILIGVALGYTFAKHLETQTKQVGFATVEDMSFLVQQLKDCQDNSLDGSY*