Scaffold Ga0133547_11477886

Overview

Basic Information

• Taxon OID: 3300010883
• Scaffold ID: Ga0133547_11477886
• Source Dataset Name: western Arctic Ocean co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1277
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 190

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005620	Metagenome	395	Y
F047373	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133547_114778862	F005620	GAG	MLSAEQITKHIATFKTFCKNNRLRLKEAEDGLPIAQAIGKFNDDQFYCNFKDGTIGVYVTRETQRHFTYLNKKLVRLGCIPTQLGDFEAAYDLEWMNIPPVARLLKIKKGAAKVKDPKWLRE*
Ga0133547_114778864	F047373	GGAG	MIITNQKIDIGDVEYSKLSHVLSFTVAANMATIATMEDICYRNDMTMEEIAEEMGNLLQQSIMTHYNRGGLRRKYD*