Scaffold Ga0133547_11369919

Overview

Basic Information

• Taxon OID: 3300010883
• Scaffold ID: Ga0133547_11369919
• Source Dataset Name: western Arctic Ocean co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1337
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 190

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004537	Metagenome / Metatranscriptome	434	Y
F005848	Metagenome / Metatranscriptome	388	Y
F016399	Metagenome / Metatranscriptome	247	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133547_113699191	F016399	N/A	TGVIGDVVKGIGAGSLVSLVMSRVAPNSSITPIAATGAAFLTGGIVGGAANLILTGGLSQLGGMFGGGASMPQEEFGV*
Ga0133547_113699192	F005848	GGAG	MLPVQRTYASTIAALNTPVFMVDNQTTLNSFLTLTPNVLQDVVNLIDPAATQLLQYTLVKNGNATSVRCFSSAISATTAGRVPIGPVSMSSGSYQWQAVQTVGALFNGQILVRYGSPLN*
Ga0133547_113699193	F004537	AGGAG	MPFSNNIVNNYQLNSGNVPLLYPVRVICAAGATTGISFPDQFLGRAISLKISNNDSANAASYDYNLNGQFQNLAASNFSTVDNTVVNYLTVIAGAAGTVLVEAQVLPASRTEIPIEVQV*