Scaffold Ga0133547_11155453

Overview

Basic Information

• Taxon OID: 3300010883
• Scaffold ID: Ga0133547_11155453
• Source Dataset Name: western Arctic Ocean co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1483
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 190

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014794	Metagenome / Metatranscriptome	260	Y
F018622	Metagenome	234	Y
F018815	Metagenome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133547_111554532	F014794	N/A	MAMASIDNLAPTRSLIDLSNPDRGDFGIDDFELSFIFDDILLINYIDETTEGEVERNGIIVPTNALTKAWRKGRVILAGPDAKYAKEGDIVIFPNNVGVTISGVSVTGKGKITKGIFLNEERMFGICKEKDVNTKSSS*
Ga0133547_111554533	F018622	GGA	MLIQKAALDSLLLSNVCEIRFARRIIKPGQAATRRMLCTKSLLLLNSVNGRISLNYFPPKGPPKAYLGPDHLAVAWDIIMQDYRNINTNQCDLIQEIPANDDFWVYFNENIYPMSAEQKVNFMNS*
Ga0133547_111554534	F018815	N/A	MNINLEKVTNFLKPLLLQNIVIKTDKKILKRGRLKIFQVKQYYINLTLDYKGSIKSYEIPYPYKMDWDKKTAIFNYHLSSFIPDRQINRVKFLDSSSRSKLYDNLVYILPCEEFIL*