Scaffold Ga0133547_10995819

Overview

Basic Information

• Taxon OID: 3300010883
• Scaffold ID: Ga0133547_10995819
• Source Dataset Name: western Arctic Ocean co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1622
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 190

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012403	Metagenome / Metatranscriptome	281	Y
F032478	Metagenome / Metatranscriptome	180	N
F035971	Metagenome / Metatranscriptome	171	N
F037204	Metagenome	168	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0133547_109958191	F037204	N/A	QMNIKIYKSLSMYDFAMDMYQKAMHMKHDHDVEHYDVQEIITYLQLIHDTEKGNEN*
Ga0133547_109958192	F012403	GGAG	MRIKPINPVAKALLQSRRRTQQVPDKTKYNRKKDKNDANKVGKHEEPKDN*
Ga0133547_109958194	F035971	AGGAG	MGNLTWNEVAQTETDKRYMSMYGLSQIDMEDMLHEDMKCMLAMSILSDAQHVMEYDKEQARQFINRAKYVIRHIKSDSGLVTTPTITNQ*
Ga0133547_109958196	F032478	AGCAG	MYWEIGIRMDGVSGVYNVHPQPLEQPLWNHAVEHAMDMAQALYPDSHIEMEFVKEFDSA*