Scaffold Ga0133547_10921641

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0133547_10921641

Scaffold Ga0133547_10921641

Overview

Basic Information
Taxon OID	3300010883 Open in IMG/M
Scaffold ID	Ga0133547_10921641 Open in IMG/M
Source Dataset Name	western Arctic Ocean co-assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1700
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	79.2466	Long. (^o)	-150.0613	Alt. (m)		Depth (m)	190
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F081863	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0133547_109216414	F081863	GGAG	VASINMIFNLISVSKMLNLFAMTITPDQFKEIMRLFDAGDFESRKEAVSMLYEGFSRHYLIVIKRDFMYNKYDDAMAEEVLQDVFLSLLSKQTKPSSAFAISAWLKSYVFNITRDRMKKGGFEVLPDDPETGGDNPSNLRDSMMIEKCMEEVIKECGKDNPEGVELFSKV

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.