NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0133547_10801533

Scaffold Ga0133547_10801533


Overview

Basic Information
Taxon OID3300010883 Open in IMG/M
Scaffold IDGa0133547_10801533 Open in IMG/M
Source Dataset Namewestern Arctic Ocean co-assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1850
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)79.2466Long. (o)-150.0613Alt. (m)Depth (m)190
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002330Metagenome / Metatranscriptome570Y
F004879Metagenome / Metatranscriptome420Y

Sequences

Protein IDFamilyRBSSequence
Ga0133547_108015332F002330N/AMIILDIMLKQIKQINETLKIGDRFTIYYAPTFTKNGEDQTTIYEPHQYEVNVRSAIWDEKCKVNKTGSLVYFDVKKNAYRTAIQTLQSIRIYINKTMYVWEESK*
Ga0133547_108015335F004879N/AFQKKIETKLEPEIEREELKIKTTVNKILDKGIKSFSKTIGADKVIARLEKAEDEKREASRLAYTFFNNKASSIVSYSKAKDYKFDRDEKNSISVKDCISQLEKWAEKQAEQYAETTEQGKRLSYLKALQTKAKDMVAEASVSDDLKSSLDNLFAFVGVTWEQKLPALPKPKK*
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