Scaffold Ga0133547_10748447

Overview

Basic Information

• Taxon OID: 3300010883
• Scaffold ID: Ga0133547_10748447
• Source Dataset Name: western Arctic Ocean co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1928
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 190

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015219	Metagenome	256	Y
F042013	Metagenome	159	Y
F051539	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133547_107484471	F015219	N/A	MTVKPESNFGRLLMKNINAQWTRIENRHGGGVPDIYGIRDGVAIWLELKCIRQNSINLSPLQISWNYNNFCNGGINYYIVRDARSKVLKLYSGNKGREIKEQGFKCPCSLQLEPPTDWQKLGDYLFCELPHCVA*
Ga0133547_107484476	F042013	AGGAG	MTKDNFQMPDYYSTKKPKIKEDLVERKCFRCNKKAKMGKFERYCSPTCRYHATKNYVNGYKLRY*
Ga0133547_107484477	F051539	N/A	RGQLAGFYIDRKEVVTASLDNMTRPELEAKLKEIRDHNIINGEAVGVEIKDITEINYKEIEE*