Scaffold Ga0133547_10495784

Overview

Basic Information

• Taxon OID: 3300010883
• Scaffold ID: Ga0133547_10495784
• Source Dataset Name: western Arctic Ocean co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2469
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 190

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034394	Metagenome	175	Y
F042629	Metagenome	158	Y
F087902	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0133547_104957841	F087902	N/A	HNVKDIAASGTVKAGHGVMVAVYVTKAGASGDKVVFHNGVDASATVEFTVYGEGVQHVQDVFRRFEAGIYAEVTGSTAKYIIVYK*
Ga0133547_104957842	F034394	N/A	MVTTTTYCSVGDISDFLRVPITSTTTPNKEMVRKIIVRKEAEIDRRIGHTWKTKKITREIHSLPLLYTFGWGTPVFLKHRHILPLDSSEGDKIEVWKSETDNWGDVLDNTQWYNIEYELGTLYLRGYLFTILRNNRIRVTYRYGGEDYAGDTVIPLDITDAVIKMTAIEVMNTSFRMDEIPSGGSVSPSESKRYWQEDIDLCVSNRREVFVLP*
Ga0133547_104957844	F042629	GGAG	MTITTYDAVDDIIDLLRTKWSSLRPPHITKVWEKRTVGFIDDRSDEIIVSPKGEDIQVYGLGGSAYWHEQIIELDIRTYQDIKRHDKVVKEVVKIIKDNMVGTTYTDLRVVGSYSRNFQFRNMFDYVVTLSYRKANPV*