Scaffold Ga0133547_10372176

Overview

Basic Information

• Taxon OID: 3300010883
• Scaffold ID: Ga0133547_10372176
• Source Dataset Name: western Arctic Ocean co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2932
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured Mediterranean phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 190

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009213	Metagenome / Metatranscriptome	321	Y
F029130	Metagenome	189	Y
F035481	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133547_103721762	F035481	N/A	MIEKYKIIKFRKSGTNKTIEKNLTLEEAKRYCSRPDTRGKNWFCGFTKQSMEGA*
Ga0133547_103721763	F009213	AGG	MNKKHYLRSTRNLYYIDENPQLRVYYSYTTPVALMIDGHLKVSQNQWSITTGRHLTWIDGGDKVKKLRLKPEEFNELVKKHKPEPNFLKTVSSVSAMFGLMCQNDVKTKNKYQKRFFDKVQGINFPDDWENLSEEEKTKRLNGATKIGLEK*
Ga0133547_103721766	F029130	N/A	MTDEYKPNFTIVNSSRLDPKYWVRKKRHNAENLILAKLIAKHLIMHRIWNGLTQNDLAFDISVTHQQYQKVESVLNDVFYVQVARIFKNRGWSKEVLEADPSIVLAEWLKRDYGNLESWALPDKYHKIIDAWKLLDLKAERNYYKK*