Scaffold Ga0133547

Basic Information
Taxon OID	3300010883 Open in IMG/M
Scaffold ID	Ga0133547_10303193 Open in IMG/M
Source Dataset Name	western Arctic Ocean co-assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010883 Open in IMG/M

Scaffold ID

Ga0133547_10303193 Open in IMG/M

Source Dataset Name

western Arctic Ocean co-assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3317
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

3317

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	79.2466	Long. (^o)	-150.0613	Alt. (m)	Depth (m)	190
Location on Map

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Source Dataset Sampling Location

Location Name

Arctic Ocean: Canada Basin

Coordinates

Lat. (^o)

79.2466

Long. (^o)

-150.0613

Alt. (m)

Depth (m)

190

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F042021	Metagenome	159	Y
F043087	Metagenome	157	N
F101910	Metagenome	102	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0133547_103031931	F101910	N/A	YQICEIDIEKSSTAKYLEQNYSCEWGFNQDTNLDPFFHLRACIVNPVKIAAGKTIPIPTGIYPALKNPSFRIEVNSFTDLVYEQGLALADGISTFEFTFRNEIWLLIKNNSEQAQMIQPTQKIATFSVNYRPRMVLNYVDQIEDIAWKNSSAKSYIQKIKKKISPDIHDVKKDKHQDMDYSRGTIQQYVDGGFATHQLDINEVEGIIRPLQREETLKKPTGVKSSES*
Ga0133547_103031933	F043087	N/A	MSIGFLTQYYRGLGHSQRIKFIAEKTAERHDVVIMDQLFQPPLDYKVPHTAFLGDYKIPDINKVFQFIQQAPIINFRINQFIKTIEKYKVKVLVCEGFPFCRQQFAHEYFRYLAECKKRGIKIIISVRDFPWDEPHHNQLQDWVLYTQNIVCKYYAERILVHGDKDLLPLISDRTRLANSVQIIKDIEPLLQYTGYVCDEDQSIHTQKNNNIYVSTGLNKDESVVIFKKIAEIAHHYPDHKFIMPIANKYNSVGGRKNKNIYLVEYVPELRNKLVDCAGYITYGGYNATVEILQSRVPSIIVPRQSGRKMEQFVRAFTFEPYDFFKVMTMQEFGGIKSLVDKIISGYKPKPFTYNLQGTSNTADILSEIYNGL*
Ga0133547_103031934	F042021	GGAG	MDFEEIAKQELMWKDLVSRGEILSLQLLAKEAKDDLEKRIAAFLVARKKAIKLGNDTFEFRDRIHSIDEKTRETVMHSWASAKNINKRRALLAYRKAETNAWIYKTLLDKKRTSLFKKCKNLVLIGAGMYPYSMFDIQKKYKHIQQVGIEIDEKRSSIGKDLVEKSPAKEHIQIVTCDGNDYDYNYLLEDDLVFISCDVDNKKMMSTIMETCKAHIFICAPYEKTWLRALLVSNKITKKDGITSFLN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0133547_10303193

Overview

Ecosystem & Geography

Associated Families

Sequences