Scaffold Ga0133547_10275623

Overview

Basic Information

• Taxon OID: 3300010883
• Scaffold ID: Ga0133547_10275623
• Source Dataset Name: western Arctic Ocean co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3512
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 190

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009045	Metagenome / Metatranscriptome	324	N
F052939	Metagenome	142	Y
F103914	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0133547_102756232	F103914	AGGTGG	MYTADRTDLLDALASSMRDCIETEISPTEFTLEDYFRCSLIDRGVASTRAEKIAQRMAEGNYSGLAYHVGSCDPDYLVKLIQAEPRLIHMLLQNNQMSDMDVAIVEKEVLK*
Ga0133547_102756234	F009045	GGAG	MNKLTEVFTPSRVSRGNRHIVQGQIVQGDNYQVEDVRRAFWSNPDGTHSAHLFRLKRGEVVDRVTVDSWEGESLNQFALRTESIILGGVK*
Ga0133547_102756238	F052939	AGGA	MNIEQKILEQIFDNLMKNDKYPEHFNFATDLRYDHSISYNPDNPTISLAIVNKGIPTKYEVTIREVA*