Scaffold Ga0133547_10266274

Overview

Basic Information

• Taxon OID: 3300010883
• Scaffold ID: Ga0133547_10266274
• Source Dataset Name: western Arctic Ocean co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3585
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 190

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024203	Metagenome	207	N
F028320	Metagenome / Metatranscriptome	192	N
F096075	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0133547_102662741	F024203	N/A	SWSLTMINELLNDWKQSMTGTEQYHAQAIDVLEDRIAKLEDKHRIASQQNEVLMNLLSKLIKRNKDE*
Ga0133547_102662743	F028320	AGGA	MANRYIKTANITLYPNSEGKATHGNSNWKPYKDGSPADIHLRKDAKYSVKLFGNDDGTFGLSISEVVVNTYTDSISDGVSQPGMRSLAETIDPPKSPIAEMSAGLSDDEIPF*
Ga0133547_102662744	F096075	AGGA	MKSHSKSYYSTQEATELMFGDTPSNRKRLLRSLKNGEVKGKKFGKRWFVYSTEIRGEDNEKA*