Scaffold Ga0133547_10209495

Overview

Basic Information

• Taxon OID: 3300010883
• Scaffold ID: Ga0133547_10209495
• Source Dataset Name: western Arctic Ocean co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4143
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 190

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013357	Metagenome	272	Y
F019113	Metagenome	231	Y
F034892	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133547_102094952	F013357	AGGAG	MARARYIPGALVEARNSKYGKGFGIILTGPILDTKAATRYSDLVTPQQWFKVHWFDKPGNVNAYYMKRNNGQVDMSKNQIKLVRR*
Ga0133547_102094954	F019113	N/A	MEEWRDTNFRVGDLVRDNLNEGAGNYGLGVIIQIDVPGLLGEKWGRSDPPADHDIPGKRYAVYFNKFERTITFHGDYLEKV*
Ga0133547_102094957	F034892	GGA	MEIKVGDLVRIKGQDWIQKPLGIVTEIKHLTHVGSGTEYTAVSAVVAGKSFTFPDEAFELVNSVESEKN*