Scaffold Ga0133547_10151428

Overview

Basic Information

• Taxon OID: 3300010883
• Scaffold ID: Ga0133547_10151428
• Source Dataset Name: western Arctic Ocean co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5029
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 190

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042021	Metagenome	159	Y
F043087	Metagenome	157	N
F097668	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0133547_101514284	F097668	AGGAG	LIDYRICEIDIEKSTTAKYLEQVYSCEWGFDQNSTIDPFVVLRACITKSVTFPVGKMIPIPTGIYPQIKNPNFGIDVRSFSELVYEQGIALADGVSTFEYTFRNEMWILLQNNSKQVQTLQPTQKVATFSVSHRPRMVINYVDQIEDSDFKNSSAKSYIQKIKKKISPEIYNIKHGKPVVEDVNYSRETIEKYKKGGIGTHGLDKYVTDVELVQEDEIKEVTGVKPSES*
Ga0133547_101514286	F043087	AGGA	MSVGFLTQYYRGLGHSQRIKFIAEKTAQYTDVVIMDQLFRPPIEYSVPHIAFLGDYTLPDINKVFQFIQQPAMINFRIKQFIETIEKHKVKVLVCEGFPFCRQQFAHEYFRYLEECKKRGIKIVISVRDFPWDEPHNNQLQDWVLYTQNIVCKYYAEYILVHGDKKLLPLVSDRTKQANSVQIIKDIEHLVQYTGYVCDEDQSIHKQRDNNIYVSTGLNKDEAVLIFKKIAEIAHHYPDHNFIMPIANKYNSMGGRKNKNIYLVEYVPELRTKLATCAAYITYGGYNATVEILKGEIPSILVPRQSGKKMEQFIRAFTFEPYDFYKVLTLQEFNNVKVVLDEVLNGYKPQPFKFNLKGASNTAKFLLEMHNGL*
Ga0133547_101514287	F042021	GGAG	MDFKDIAKQEELWKDIVLKGEMLTIKLLTEEAKKELEEKIANFLITRKEAIASNKFVFMFRDKEYTIDKDNVDIAIKNWASTKNIGKHRALLAYKKAETNAWIYKTLLDKKKTGMFKACKKLILVGSGIYPYSMFDIHKKYKHIKQIGIEIDTNRAAIGRDLVSKSPAKNHIEIITHDGCTYDYGGINLGEDDLVFVSCDVDNKKVIDRVIATSKAHIFICAPYEKTWLRALVQNIKVAKHSGITSYSA*