Scaffold Ga0133547_10110522

Overview

Basic Information

• Taxon OID: 3300010883
• Scaffold ID: Ga0133547_10110522
• Source Dataset Name: western Arctic Ocean co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6073
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 190

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004907	Metagenome / Metatranscriptome	419	Y
F006365	Metagenome / Metatranscriptome	375	Y
F019731	Metagenome / Metatranscriptome	228	Y
F047915	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133547_101105221	F004907	N/A	DRHSYIDRVKESIAFERKFLQAETELISINKLEESPKNDTVRAYMRMNDKIAEGMVA*
Ga0133547_1011052213	F019731	AGGAG	MDDLDNILSNIDLEEELTETEDTAKDWYCGDCEHGPMMDNDTNCTRCGAKHGAHQEEEMTGWEDEDVESEVEEIW*
Ga0133547_101105225	F047915	N/A	MKNMKAIGISFLDGMWFGAYTVGPVMVFLWAIGFISINI*
Ga0133547_101105226	F006365	AGGA	MPKTEIPPYDYQVWFKGSKKPIHMYGMHEDHIRWQSDPKVPVKIKRIFIKEEPIRKSEHLGPKGCTVNQPADYDKGFKVLREWIDSEGGPPESIRKELRELFIDYDRVDRKTTTYSGKKKNRHKI*