Scaffold Ga0133547_10090419

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0133547_10090419

Scaffold Ga0133547_10090419

Overview

Basic Information
Taxon OID	3300010883 Open in IMG/M
Scaffold ID	Ga0133547_10090419 Open in IMG/M
Source Dataset Name	western Arctic Ocean co-assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6857
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (42.86%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	79.2466	Long. (^o)	-150.0613	Alt. (m)		Depth (m)	190
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050687	Metagenome	145	Y
F076521	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133547_100904194	F076521	N/A	MSHKENYNNNRPERTKFNPSKFGPTWASIYWKGKPGLIPMGDANQPIIGEISIAGRQFDLTFSECNKLIETLIDAKEIAKISRRLGTTSNAAGSPIGFMEVQSEMYKK*
Ga0133547_100904196	F050687	N/A	MINSKEAFMSRFKRTKKRLEKRFPGAKLNSTPNGKFYIGQKGSNIIGEEYIDLSIANSGWEAWRNLDTVEHWNRINTRNKQKLRKSLDHIVVSGDMTTYDPTDYIEKPESFTISDGIEWDNV*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.