Scaffold Ga0133547_10084118

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0133547_10084118

Scaffold Ga0133547_10084118

Overview

Basic Information
Taxon OID	3300010883 Open in IMG/M
Scaffold ID	Ga0133547_10084118 Open in IMG/M
Source Dataset Name	western Arctic Ocean co-assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7165
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (63.16%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	79.2466	Long. (^o)	-150.0613	Alt. (m)		Depth (m)	190
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F035085	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133547_1008411819	F035085	GAGG	MIDAIVERIENYTPNDEKDGFKFESIVKNRNLIAQNHLDNINELPKQEWEDEKEYTHWDEHGRIQTYFLCYVDLIGQTHFGDIKNVFGTVTTTKKGLNYTKKKCPTKPFHSDCLQMALYSKVLPNHIPFLTYASDCDRQLFTPDNCEELQKDNLERYYNELVLYQRCWEKKLELANGDINILALLCKPDFSEIRKNGFWWKGFPKEIIQRFRSYYV*

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