NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0123354_10418076

Scaffold Ga0123354_10418076


Overview

Basic Information
Taxon OID3300010882 Open in IMG/M
Scaffold IDGa0123354_10418076 Open in IMG/M
Source Dataset NameLabiotermes labralis P4 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1117
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NamePetit - Saut dam, French Guiana
CoordinatesLat. (o)5.0626Long. (o)-53.0462Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F093065Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0123354_104180762F093065N/AVPDGTVNCTVLYSEPNIVEDIKIGRLGWAGHIMRMEEERIQNKGFKRKLLYHKKSGKTKKQMGGCGPGRMHYDCWG*

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