Scaffold Ga0123354_10195174

Overview

Basic Information

• Taxon OID: 3300010882
• Scaffold ID: Ga0123354_10195174
• Source Dataset Name: Labiotermes labralis P4 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2249
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Petit - Saut dam, French Guiana
• Coordinates
  • Lat. (^o): 5.0626
  • Long. (^o): -53.0462

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000162	Metagenome	1833	Y
F005119	Metagenome / Metatranscriptome	411	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0123354_101951744	F005119	N/A	MRHNKVCTHLHYSICKALGIETTDKWYIHMPKPVCEEGAVTVLWNQAVHTDRGVTANRPDIIIKTKKRKHAH*
Ga0123354_101951745	F000162	GAG	MYKDTINVEPEMYDYTSNNWSHWNGNKKLKEKFGSCTRKTFDRFTTKDSYTWNITHNTES