NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0123354_10195174

Scaffold Ga0123354_10195174


Overview

Basic Information
Taxon OID3300010882 Open in IMG/M
Scaffold IDGa0123354_10195174 Open in IMG/M
Source Dataset NameLabiotermes labralis P4 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2249
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NamePetit - Saut dam, French Guiana
CoordinatesLat. (o)5.0626Long. (o)-53.0462Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000162Metagenome1833Y
F005119Metagenome / Metatranscriptome411Y

Sequences

Protein IDFamilyRBSSequence
Ga0123354_101951744F005119N/AMRHNKVCTHLHYSICKALGIETTDKWYIHMPKPVCEEGAVTVLWNQAVHTDRGVTANRPDIIIKTKKRKHAH*
Ga0123354_101951745F000162GAGMYKDTINVEPEMYDYTSNNWSHWNGNKKLKEKFGSCTRKTFDRFTTKDSYTWNITHNTES

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