Scaffold Ga0126350_10445417

Overview

Basic Information

• Taxon OID: 3300010880
• Scaffold ID: Ga0126350_10445417
• Source Dataset Name: Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4131
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil → Forest Soil Eukaryotic Communities From Alaska, Usa, For A Soil Warming Experiment In A Boreal Forest

Source Dataset Sampling Location

• Location Name: Alaska, USA
• Coordinates
  • Lat. (^o): 63.883
  • Long. (^o): -145.733

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F000536	Metagenome / Metatranscriptome	1044	Y
F009182	Metagenome / Metatranscriptome	322	Y
F085961	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126350_104454171	F009182	N/A	FKFRIQFKKSHVTRDELIVTLREILSQLEGSSSEAADSTAA*
Ga0126350_104454172	F000536	GAG	MVEFSPQQMQILERLFTAGFRPIAIPPYESALCVRRGECAAILSPIPNGGLKLLAPPSFLVDGNLSVRLRRGAGEVFVWKKAELPATEERLEELESFRRELAGILELPQTL*
Ga0126350_104454176	F085961	GGAGG	MTTRATQPPWEFLLSASRNSLQSFELSRLAHAANLRKEIAALLDQWMEENAAAMLARLLLQQRERSARAPDMLSEGDSRNNGAHSVSDNFLSDRAASQPVNRGPS*
Ga0126350_104454179	F000188	GGAGG	MSVKPELAFDVCWEVFRGAREVLESKRGISALNWKDTGKFLWRPDFRPRLNEWVADFALAGQKALDGPDWASRMVLFRLYYLGLAPYENARHFLGLSERSWVNWTEEVRLHCGKELLRRGMFPPRRYFAGGS*