Scaffold Ga0124844_1037943

Overview

Basic Information

• Taxon OID: 3300010868
• Scaffold ID: Ga0124844_1037943
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1604
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004041	Metagenome / Metatranscriptome	456	Y
F021388	Metagenome / Metatranscriptome	219	N
F053645	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0124844_10379432	F053645	GGAGG	MKKLAILGIIGGAAILTAAPLSLQWSQKNVALSLDSAKAGTATSGVSRRVHRKVYRRVAYGTAVAGSGGYDYSSLANCGGGYLAYGTSYVAPCGQYSSSYAIAEERLKAGYSVAPYSYYGPSSSYRRPSRY*
Ga0124844_10379433	F004041	AGGAGG	MAPKSDKSFAKATTKLGLATAIAALWFTAVPITDAAADVQISAARAQAIQQCNRLASRYPLHDWGNLQIRLYRSCMAQHGQQE*
Ga0124844_10379434	F021388	GAG	MRIKRTPNDAGTKLTIEFTYYDNGFVSINGSPKGEYTPDAAERWLASTRFVMQMIEEFRNYINKSKTSV