NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0124850_1073278

Scaffold Ga0124850_1073278


Overview

Basic Information
Taxon OID3300010863 Open in IMG/M
Scaffold IDGa0124850_1073278 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1036
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020242Metagenome / Metatranscriptome225Y
F028118Metagenome / Metatranscriptome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0124850_10732781F028118N/AFTVRAGAPIRELKQFQELVKRNCAELAYCEDIAVSTKHFTFSKLPVSSAKVTERFKINPEINPDPIDKDGGATRHQFSPTGETVTYTAQAAELWITDGRSLTPAAEVLEHAFQWWRKFFNEMSTS*
Ga0124850_10732783F020242GGAMEFDVSNFQALATNLVIEGEVCDLAHAKLSTQTETDMEIAPLIQQVGAASIAEIDRLIAELQEAKNYLQSEGERIEREIVRYTNLTQMASFTAEMISDAVSQWFPGVTNYLTRSEP*
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