Scaffold Ga0124850_1003335

Overview

Basic Information

• Taxon OID: 3300010863
• Scaffold ID: Ga0124850_1003335
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4846
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001673	Metagenome / Metatranscriptome	654	Y
F008398	Metagenome / Metatranscriptome	334	Y
F025475	Metagenome / Metatranscriptome	201	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0124850_100333511	F008398	GGGGG	MNIDDSRLIVRFQRLITEMLVEKRLGQRRPGLIDDLYQMWREVGRRGLTETPEYRDVLLRADRHALWLAGLVRLAAPPVSSAETERT
Ga0124850_10033355	F001673	GGA	MASFVAVLLVLAFGHRWSVTASWFTSDKTCRERHATPWYVERLGIDCDRLLRARLWKLYDEGHLFGRLRGGRGGAFEYIMKQLEHPDE*
Ga0124850_10033356	F025475	N/A	MHAALRWFKIAKLLTYRVNMAQIHALSAEQRLAQWVIYAVLAAPIVATLLRDLGVGAVAPWILYATIAVPMIAMLSHREINVDLIIRWVLFAIIALTPILPTRFY*