Scaffold Ga0124850_1000602

Overview

Basic Information

• Taxon OID: 3300010863
• Scaffold ID: Ga0124850_1000602
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8323
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000535	Metagenome / Metatranscriptome	1044	Y
F003372	Metagenome / Metatranscriptome	491	Y
F005182	Metagenome / Metatranscriptome	409	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0124850_10006022	F000535	GAGG	MSTLRTHFTFRVDTWTPDGESIVEHVAGVEDYQVALATFRAACERWPGTPITLRQGARVIEDSRRMRVVSSR*
Ga0124850_10006023	F003372	GGAGG	LGQKEMAMTQGKMPFVFGMLATLLITAPAAHAACRSPKNICKHLDDCLQRTSDPNNKDTDGIRAGVKARNGQIVLAGAEACARDLGKKQQWDKWARGCSELEFIQIAKVGLELGKVHCDRYSQ*
Ga0124850_10006025	F005182	GGAG	MRKISLFAFSPALIAIGFGVWAALPAKAPVSLAIVQSIEPLQMMVMPTVEFVDYTFVFTD