NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0124850_1000416

Scaffold Ga0124850_1000416


Overview

Basic Information
Taxon OID3300010863 Open in IMG/M
Scaffold IDGa0124850_1000416 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9046
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000892Metagenome / Metatranscriptome846Y
F003695Metagenome / Metatranscriptome473Y
F003971Metagenome / Metatranscriptome459Y
F014338Metagenome / Metatranscriptome264Y
F020244Metagenome / Metatranscriptome225Y

Sequences

Protein IDFamilyRBSSequence
Ga0124850_100041610F003695AGGAGGMAQEPDSLAFRFAVVLGLAVIILVVMTLAAPPHPADDTAAPIQSSDPIYRAQYLNLY*
Ga0124850_100041611F000892GGAGGMTNRRRSAAIRSVPAQTPEQLLELAQEHIRPLIGVIDRLNEAKAEDELRVISKQLTRLSFRAQPPLSDK*
Ga0124850_100041612F003971GAGGMNYLLSILIIAVLASQATILHSLAPIRDAIRQTNAIILAACGSDERPCQVAAHRGQIELGEIMVRTRISDGLSCGYSRYNPCWIKASSEDGLVGP*
Ga0124850_10004163F020244GGGGGMKTLTGVQLFAPGQRGPRKTKDWFERAKLVVAAARERAVETAQQSATPSIKRPPTVWQRRRLVERLSAKS*
Ga0124850_10004168F014338N/AMREELPMDYIDLLKRVAIPLGTVMVLSPAPAQEQLTKADLVQLAVTLGVYDNRCEKLAPRLLADVQRLVRMLDKDDVMAAVINEQDKVDRAGEAKWCDALSPVVEKYKDGLFEPVR*
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