Scaffold Ga0126352_1110400

Overview

Basic Information

• Taxon OID: 3300010859
• Scaffold ID: Ga0126352_1110400
• Source Dataset Name: Boreal forest soil eukaryotic communities from Alaska, USA - C5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3204
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil → Forest Soil Eukaryotic Communities From Alaska, Usa, For A Soil Warming Experiment In A Boreal Forest

Source Dataset Sampling Location

• Location Name: Alaska, USA
• Coordinates
  • Lat. (^o): 63.883
  • Long. (^o): -145.733

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000323	Metagenome / Metatranscriptome	1300	Y
F003754	Metagenome / Metatranscriptome	470	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126352_11104003	F003754	GGA	MLLQKENAKQYLYVQQAAKQGFMVVDVTRPEKPSLLKRTAESNQATSGNLEMVSPDVAIAEAPEKTPTTLTSSSHPTETVRVLDLTDPRNPKTLETFTKVTSILPDSSHSLIYLTNNEGLWILRYNHPSLLEPARKKPPCDSNSEIMAMPPDCD*
Ga0126352_11104004	F000323	GGAGG	MRKLWFAILLLAGSFLVAQDYPANSGKHESKDSKGEITVQGCVGRSSGDYILTKQDPAMTYELQATGKTRLKNYMGQRVEVIGKESPSLSTSSDAMNKTGSASSVTLTISSIRSIAKECTVR*