Scaffold Ga0126345_1140065

Overview

Basic Information

• Taxon OID: 3300010858
• Scaffold ID: Ga0126345_1140065
• Source Dataset Name: Boreal forest soil eukaryotic communities from Alaska, USA - C3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 724
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil → Forest Soil Eukaryotic Communities From Alaska, Usa, For A Soil Warming Experiment In A Boreal Forest

Source Dataset Sampling Location

• Location Name: Alaska, USA
• Coordinates
  • Lat. (^o): 63.883
  • Long. (^o): -145.733

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004502	Metagenome / Metatranscriptome	435	Y
F075137	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0126345_11400651	F075137	N/A	TAAGQFGQPGQQQVAAWTSATGTSWQRAPIGGLSAPQTGGSYQISALAPSGNAVTGIGSLATQASQEVFTVTLPAR*
Ga0126345_11400652	F004502	GAG	VDNDAGKPGQQFRASWQVAADALSEWSKRISEATHEALDKIEPAVRSAVEAGRSAMTGEWRNCRCQCRTAHPADSGVCDGRAVMTRSVGGADVSLCAPCAVAQGVAEMKL*