Scaffold Ga0118733_102559403

Overview

Basic Information

• Taxon OID: 3300010430
• Scaffold ID: Ga0118733_102559403
• Source Dataset Name: Marine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samples
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1008
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Atlantic Coast Under Amendment With Organic Carbon And Nitrate

Source Dataset Sampling Location

• Location Name: Atlantic Coast
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010465	Metagenome	303	Y
F071009	Metagenome	122	N
F090089	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0118733_1025594032	F010465	N/A	MKETLLDPIDMTEELMFHMFNNDMNRELDGEFLNLYLSLQHYKEHLEKLEEE*
Ga0118733_1025594033	F071009	N/A	MTTHPENLPSLDDESLQALITHYTGLKYKLTDNLRVRERLVELQDEQLKRQIEALGNYEPIGDDIKNQLNNQ*
Ga0118733_1025594034	F090089	GAG	MSVTYYLTDHNGQQIAFFYRIESERYNTVPSILWACRQYPQFQGTASSKGDFIEQAKQTLKEIKKLSVPVRSSKKCTDCDLSLQGRENESNVCDECNPITE*