Scaffold Ga0118733_102116578

Overview

Basic Information

• Taxon OID: 3300010430
• Scaffold ID: Ga0118733_102116578
• Source Dataset Name: Marine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samples
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1117
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Atlantic Coast Under Amendment With Organic Carbon And Nitrate

Source Dataset Sampling Location

• Location Name: Atlantic Coast
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004358	Metagenome / Metatranscriptome	442	Y
F006827	Metagenome	364	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118733_1021165782	F006827	N/A	MSEETEEEITINYLVYETLDDAIARADTEGARRGYAYHRVGSGTRYRTYPQETADAKYALVVDGYELTEDEESAITTSVTFPDPEEV*
Ga0118733_1021165783	F004358	N/A	MFGLVTMLLSTLGATGMGSMLKIVGGIVQSANDAKEAKAKRELIRDMSMSNANADFQKSVFGEIDQDTSIFTRATRRLIALIGMLNFAAISIWCTIYPGIDLVTFTPPENKESWDILWGLISFPSGSDLTT