Scaffold Ga0118733_101018076

Overview

Basic Information

• Taxon OID: 3300010430
• Scaffold ID: Ga0118733_101018076
• Source Dataset Name: Marine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samples
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1653
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Atlantic Coast Under Amendment With Organic Carbon And Nitrate

Source Dataset Sampling Location

• Location Name: Atlantic Coast
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039113	Metagenome	164	Y
F047028	Metagenome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0118733_1010180761	F047028	GGA	MVNLSRGAADLVKTLFKGEEKERMISAGVVRTILADMIKLYFEHKAGVGKGVLVFNPVQPELSNYLTVEDLENDLAVAQESMNKELEELFELIIKVIQKEDSNELALIAMIQDSEIAVHLIDPVEANKNIDELSNGIIF*
Ga0118733_1010180762	F039113	N/A	MDIIKEIKQIKVAVESIDVSLQLLASENGGARRTSGFVSKRVVAQRLNIPSVTLDKLIHQGIVSYGKTGLVEGTHFCKIDPVEKNSSKFLYDIHSIIHSAWNNFKNG*