Scaffold Ga0118733_100698402

Overview

Basic Information

• Taxon OID: 3300010430
• Scaffold ID: Ga0118733_100698402
• Source Dataset Name: Marine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samples
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2020
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Atlantic Coast Under Amendment With Organic Carbon And Nitrate

Source Dataset Sampling Location

• Location Name: Atlantic Coast
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004343	Metagenome / Metatranscriptome	442	Y
F032084	Metagenome	181	N
F038638	Metagenome / Metatranscriptome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118733_1006984022	F004343	GAGG	MTQHREMIEEAKRLLNSKRENIPSMSKDFGKDYWLLTYPCGKIVKTYEDKRKRDIVIQDSYSGGEL*
Ga0118733_1006984025	F038638	GGGGG	MSYDIAQYKYINHMREHYGLIGEPEYPDRTRSHQDENGNWLLISEQGLKMAKIFKNGDIIA*
Ga0118733_1006984027	F032084	AGGAG	MRLILSEKDKHIIVTVLGDYATEIDRQATKSKEDLDTYKRIENIISQVAFGIDKEEKEE*