Scaffold Ga0118733_100466060

Overview

Basic Information

• Taxon OID: 3300010430
• Scaffold ID: Ga0118733_100466060
• Source Dataset Name: Marine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samples
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2507
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Atlantic Coast Under Amendment With Organic Carbon And Nitrate

Source Dataset Sampling Location

• Location Name: Atlantic Coast
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008114	Metagenome	339	Y
F008731	Metagenome / Metatranscriptome	329	Y
F037990	Metagenome	167	N
F080523	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118733_1004660601	F080523	N/A	EVPSIGKKLRQELQTSYSRAGKKHGMAAYEMQAATWVAWKRIHNV*
Ga0118733_1004660602	F008731	AGGAG	MFVLFATKPLNDGTNGFRFNFAGLKGLTRKRKTLSRGIKFSSQDCMKAFHLGKRSIYIERKPNRNTERKLRHFAG*
Ga0118733_1004660605	F037990	GGAG	MKFDKPTARKIREAMQEALENAGIHGVSINVGNCSFTEGEATYKVKVLIDGAKSKDEEALEQMATLMGLSTYKIATLQGMRVSLVSYNSRARKRPWVVQDLTTAQKYIIDDDTAKRLFGAEAEVS*
Ga0118733_1004660607	F008114	AGGA	MMNLTINTKAFPDADPGMLQEMLGVLPYWVGEYILLGTDMDIVGFMTERYGFGRLYQFKGDVQEDGTYSYPEDPDLPYVGKMNTPNGYVYFYQYAMLALPLPNGEYFVTRMD*