NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116241_10424417

Scaffold Ga0116241_10424417


Overview

Basic Information
Taxon OID3300010429 Open in IMG/M
Scaffold IDGa0116241_10424417 Open in IMG/M
Source Dataset NameAD_USRAca
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1048
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)40.3Long. (o)-88.15Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033445Metagenome / Metatranscriptome177N
F058173Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0116241_104244171F058173N/ARVKKRRRKKSLKNSGEHMKMQYWIAIGVTAAIIVIIAAFFWGRYHPDPDVIGRLTDQIKAETIKQYEQRITDLNTQLKTSQAAYIESQKRYDTIIKKIKELKDGKDNIKPPADSAELTARFNNLGYTVTGK*
Ga0116241_104244172F033445GAGVVQYEVSVKELSIQIESLKTQVETMSKKFDETMKQLETERKIASEKDKARLEEIKAAGKPQWTMLFGGFGAGAVLIGALVLLL*
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