Basic Information | |
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Taxon OID | 3300010429 Open in IMG/M |
Scaffold ID | Ga0116241_10072428 Open in IMG/M |
Source Dataset Name | AD_USRAca |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3079 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA | |||||||
Coordinates | Lat. (o) | 40.3 | Long. (o) | -88.15 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F021528 | Metagenome / Metatranscriptome | 218 | N |
F051104 | Metagenome / Metatranscriptome | 144 | Y |
F078674 | Metagenome / Metatranscriptome | 116 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0116241_100724283 | F078674 | AGGAGG | MEAIKKAVENRRAPFEVEGKAGGKIISLRVSEKMGELLEKQAQEWNKSISDTLRGILNFYFLPPLLYEAWEKKVQALIELDIKTVGENRADLNAPTQAQSIENVFCDSEEAEEYAQFIGQLWDKNVKYWEILREEAQVAHEIAGDQLLKTVKALERIQAEMKNAKVEGWVE* |
Ga0116241_100724284 | F021528 | AGGAG | MIDTLKLMLNDYEISDSSEIRVQPASYELGTGSKVEYPLFQTPSHGSHYGSKAYLNSENWNLTLKPMVGGVIATGAFLQFSVPKNYYGSNFYSVGEQGTQAVLNKVEGELKEKGVHTNIFEAYMSRVDTFKNIEPEEPFSSYYSLFSLLKARKAVQRGYGTTFLLSNTQQEFCVYDKLEEMRERKLETNNLPNTMRFEHRLLNKQKIQNVYGISKVADLFHGGYEVVKEKQVESWKGSLFNFTAEELVLLGSKQLEQEMRRFKERSPSGWFSKFLKAYGAYYLASHAGKEVVIEALQNFEADRMKIWRAVQVFEEAERELMVLKQEEGSNKTLGVLYEELKRKVCLN* |
Ga0116241_100724285 | F051104 | GAG | LFELRIAEAIEEEAVLSQNLIEEGFLHAFKAGELLQEVKSMLHSGGDLEQWLEQNCSKVERQVVLNCLKLFNGETVKVEVTTKEGKNQKRERG* |
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