Scaffold Ga0116241_10072428

Overview

Basic Information

• Taxon OID: 3300010429
• Scaffold ID: Ga0116241_10072428
• Source Dataset Name: AD_USRAca
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3079
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 40.3
  • Long. (^o): -88.15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021528	Metagenome / Metatranscriptome	218	N
F051104	Metagenome / Metatranscriptome	144	Y
F078674	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116241_100724283	F078674	AGGAGG	MEAIKKAVENRRAPFEVEGKAGGKIISLRVSEKMGELLEKQAQEWNKSISDTLRGILNFYFLPPLLYEAWEKKVQALIELDIKTVGENRADLNAPTQAQSIENVFCDSEEAEEYAQFIGQLWDKNVKYWEILREEAQVAHEIAGDQLLKTVKALERIQAEMKNAKVEGWVE*
Ga0116241_100724284	F021528	AGGAG	MIDTLKLMLNDYEISDSSEIRVQPASYELGTGSKVEYPLFQTPSHGSHYGSKAYLNSENWNLTLKPMVGGVIATGAFLQFSVPKNYYGSNFYSVGEQGTQAVLNKVEGELKEKGVHTNIFEAYMSRVDTFKNIEPEEPFSSYYSLFSLLKARKAVQRGYGTTFLLSNTQQEFCVYDKLEEMRERKLETNNLPNTMRFEHRLLNKQKIQNVYGISKVADLFHGGYEVVKEKQVESWKGSLFNFTAEELVLLGSKQLEQEMRRFKERSPSGWFSKFLKAYGAYYLASHAGKEVVIEALQNFEADRMKIWRAVQVFEEAERELMVLKQEEGSNKTLGVLYEELKRKVCLN*
Ga0116241_100724285	F051104	GAG	LFELRIAEAIEEEAVLSQNLIEEGFLHAFKAGELLQEVKSMLHSGGDLEQWLEQNCSKVERQVVLNCLKLFNGETVKVEVTTKEGKNQKRERG*