Scaffold Ga0116241_10060068

Overview

Basic Information

• Taxon OID: 3300010429
• Scaffold ID: Ga0116241_10060068
• Source Dataset Name: AD_USRAca
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3461
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 40.3
  • Long. (^o): -88.15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045053	Metagenome / Metatranscriptome	153	N
F052500	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116241_100600682	F045053	N/A	MITVATYTVPGFGEVSVVRQNDAGNPCWDLFAPSGEWLNEGHPFRCKPRRAQVEAFLAQRLKEALARVSKECRRLHIQQEDLDELVHEAAQADNPRLNDAPGEEQQERLITKAEERACCINNRGRADQLIYLLEIYGETGVLAALRRV*
Ga0116241_100600683	F052500	N/A	MTSRAQREKASGIANEIAGLQGVQSAVVDDDNGCGSFNLFVKLRNRLEEHYASRRIEFVNPLHGLMARIKSIVERHGARLEWHEPPRRLYSRPGHGKKLFGGYDTDSYKLSVHVPQPDGENQRTAEAQLAFA*