Scaffold Ga0137504_11646

Overview

Basic Information

• Taxon OID: 3300010420
• Scaffold ID: Ga0137504_11646
• Source Dataset Name: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS5_30_TP1_13L
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 679
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location

• Location Name: Anemone vent, Axial Seamount, Northeast Pacific Ocean
• Coordinates
  • Lat. (^o): 45.933
  • Long. (^o): -130.014
  • Depth (m): 1542

Associated Families

Family	Category	Number of Sequences	3D Structure?
F078696	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137504_116462	F078696	AGG	MKLWSSAVTYLNVQPSEAWNLTPFEFWALWDGHLEKMEISTGKAYTRPMTMDEFNELSDFLDKLHGDN*