Scaffold Ga0136852_10434840

Overview

Basic Information

• Taxon OID: 3300010412
• Scaffold ID: Ga0136852_10434840
• Source Dataset Name: Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Novogene Bioinformatics Technology Co., Ltd
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1277
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment → Mangrove Sediment Microbial Communities From Mai Po Nature Reserve Marshes In Hong Kong, China

Source Dataset Sampling Location

• Location Name: Mai Po Marshes at Hong Kong
• Coordinates
  • Lat. (^o): 22.0
  • Long. (^o): 114.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001841	Metagenome / Metatranscriptome	627	Y
F022190	Metagenome / Metatranscriptome	215	Y
F090297	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136852_104348401	F001841	AGG	MRVAAWVFWRDPVAKPEPPQPKRPRKPVLGYTVGDIPYELLAVVRVSWYRKGMAYEVEEYQIEESDDAQQQFHYIVGTALRQGADVCVLTQYEPAALGVPE*
Ga0136852_104348402	F090297	N/A	MYEPFQAKVDNTNLSPWYYAVGWAKHSLQNQINRYAELGLNTSYEEKQMERLVELEQFLKMSWDEWMDSLLPSKTEQEVK*
Ga0136852_104348403	F022190	AGGAGG	VSQVQSIEELRFEGDHLVVDAVVDDMVVRYAQTALEPAEWGPALCRGTLYFSDEDLIPATDAELRALLSERVDDWAPVDTSDWYV*