Scaffold Ga0136852_10195989

Overview

Basic Information

• Taxon OID: 3300010412
• Scaffold ID: Ga0136852_10195989
• Source Dataset Name: Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Novogene Bioinformatics Technology Co., Ltd
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2024
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment → Mangrove Sediment Microbial Communities From Mai Po Nature Reserve Marshes In Hong Kong, China

Source Dataset Sampling Location

• Location Name: Mai Po Marshes at Hong Kong
• Coordinates
  • Lat. (^o): 22.0
  • Long. (^o): 114.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004722	Metagenome	426	Y
F017122	Metagenome / Metatranscriptome	242	Y
F022403	Metagenome / Metatranscriptome	214	Y
F043896	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136852_101959893	F043896	GAG	MTEQDRQNWGQVIVDNARVELLEKLYAWDGRSNPEHPYHHTYTGLYMQYNKR*
Ga0136852_101959894	F017122	N/A	MEVVPFQEQLSPELRLGEGRSRTSAEKSMLFELKIWLPGQGAMRDLVRAESLQQAITFATNRYPNCRVEVPGTAAGKPRLVRSKNGPKETARRRLKIVETKNEQSDD*
Ga0136852_101959895	F022403	AGGAG	MPLRHGQKWYVQLLLDNHRYKLAQDLAAAEGKKLTAMLREMVYAALEKSVPASDYKAAKAADEAAWAESVQRRVQGRMRSRQEEGVSETDA*
Ga0136852_101959896	F004722	N/A	MSRARTGRELVMEWLMREIRMAKTSDLHRMAAFLEFARQIRMGSRQQRTKARLGQANAWRKDVDEDVRWRV*