NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136852_10041505

Scaffold Ga0136852_10041505


Overview

Basic Information
Taxon OID3300010412 Open in IMG/M
Scaffold IDGa0136852_10041505 Open in IMG/M
Source Dataset NameMangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Novogene Bioinformatics Technology Co., Ltd
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4852
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment → Mangrove Sediment Microbial Communities From Mai Po Nature Reserve Marshes In Hong Kong, China

Source Dataset Sampling Location
Location NameMai Po Marshes at Hong Kong
CoordinatesLat. (o)22.0Long. (o)114.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021773Metagenome / Metatranscriptome217Y
F039135Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0136852_100415052F021773GAGMVLLNNEFLDNILDRGLKARYSENSQIFLTDLKNLLISKNRLKLGKFVDKECVEDDEVSKINGLFDEVKFDIEKDWNVLVNARITARNIIDKLLPDQKLESDMISAIYWLGPNKDDEHQEDIVIELDGGKQYSFFLNKNLLSKKSASFNTFAENLLGQDLELLYKQEYLPKWDKLTQEWIRILYENANKNIQLHIEKFIDPKRIESIGYFEYFDIRHSDYKYKYLGEFIKDFDKNILKLSDLLTEVWKHRDNCFMDPERVYAEWMEAKIVILNSRILENLFTTSLKSNFANDIKKLEDGFKLAGGAVKMKLFKSFIDKLGCEERPLYFLGSNGNIFNLLPERDFFRKNYDDMNIKFDYHVNFAVSEQEESNDFKVKLILELDDKKLLDMTITIKFSHEMSGRLTASYKFNLSNNFNYMIATKKSNNVEE*
Ga0136852_100415053F039135N/AMKYLKNYTLYKESILVDLAYQDVIELVESLTIWHDALLSALSAEEVDMFDTFNLPVDDFKDKLDLDALESNVEFINSLSSIALKKSALQHSDDYSTFLNKPCKFMFIYGINRNELENPDYLLFQSWNETLDKWEEVKSYKINDEVKKFYDKLSSRTIELVDGDQNYIYTTNNGNEWVLQNSDKENDIYKKVFRKEEFQDFIKERKIKVNII*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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