Scaffold Ga0126383_10808054

Overview

Basic Information

• Taxon OID: 3300010398
• Scaffold ID: Ga0126383_10808054
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_35
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1021
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005077	Metagenome / Metatranscriptome	413	Y
F008059	Metagenome / Metatranscriptome	340	Y
F020501	Metagenome / Metatranscriptome	223	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126383_108080541	F020501	N/A	MDLIEYFERQRKRCERELKYAEAAGFQLCEQTARGEQDITQEHIQQLREAREEYQRMIDYLKARD*
Ga0126383_108080542	F005077	GAG	MKFAPSAPTRKEQMEQLRRDRATAPALRTAFPTVHHLRIELRFQGSGSNVPTPQTHMLYPPAHAFFEYLCPYADCDGQFDLDGAVSAALADPTHRAEGMLECHGSRGQDPASRRACLLQLTYEVTATYQQPS*
Ga0126383_108080543	F008059	N/A	YMTTSRTGDLTNPAERLARDEYERAEKRRQELAEQRSDVNPPHVRIRTWERVHQLRMPSDPAHPILDVIAVSTRLTLEEVWEEQRMRAARGASQT*