NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126383_10061849

Scaffold Ga0126383_10061849


Overview

Basic Information
Taxon OID3300010398 Open in IMG/M
Scaffold IDGa0126383_10061849 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_35
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3177
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000534Metagenome / Metatranscriptome1044Y
F001318Metagenome / Metatranscriptome724Y
F040900Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0126383_100618493F040900GGAMFVAIAATSQDAFKILLLVAMGGGLLSLGRWRSRLGARQRLDSPANLPTPDPSDLMPSGELAPKVCPPSAEEVAASLPYDPSLGRIRIKRLFFDKTDVHPGPDDPEVFAEELHIELYDPDSDHAWWQSYFVATPQGLANILQEKHWRYMHAPQILVFPRYDLDEIRRAVVNRIVADNELFRGKEAENEESL*
Ga0126383_100618494F000534AGGMPQEISVSYQAIKSKVYRLIDSLVVGEKSEAEVQESVRRWWALIHPADRPIAQKYLLMVLGRSNSALDAMSTELLAVSGCDLVQPRIADPVIPTKRMRLMERTLKENSVRSAV*
Ga0126383_100618495F001318N/AMWRFTHWGGEMKRWAWILAVPVLSLCVGAQTAGSQSAQGTNSSNSSRGVWSEGVWREAGPEDRMFFPKDMIYAWAQFDLSPPHNEIDPNQCAGNSYVDGGANAPCNMFARYMLSGILEVRPFGRGPLRRFMLWGAPAFLFGKNVPKTLYTWSPDAIGIEHSWGLGIYLTKGFEFRVTQHFLFDRLGARDKNLGVADLGTNGPWGRYMSLGVRKTFGTRRW*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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